An open bioinformatis software repository

This website is created as an index page linking to several bioinformatics software developed by my lab.

Current list includes:

  1. PennCNV: a suite of programs for copy number variation detection in high-density SNP genotyping platform
  2. GenGen: Genetic genomics analysis of complex data
  3. ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
  4. SeqMule: Automated human exome/genome variants detection
  5. Phenolyzer: Phenotype-based prioritization of candidate genes for human diseases
  6. iCAGES: Genome-guided precision medicine for cancer treatment
  7. Enlight: integrating GWAS results with biological annotations
  8. PennCNV2: New software framework for PennCNV with application to tumor/NGS
  9. wANNOVAR: Easy and intuitive web-based access to some functionalities of the ANNOVAR software

Other related software tools (in which I have very minor contribution) include:

  1. SeqHBase: A big data toolset for family-based sequencing data analysis
  2. Jannovar: A Java library for Exome Annotation