FastQCFastQC Report
Sat 10 May 2014
son.1_phred33.fastq

Summary

[OK] Basic Statistics

Measure Value
Filename son.1_phred33.fastq
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 69389975
Filtered Sequences 0
Sequence length 90
%GC 47

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[OK] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[WARN] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
GGAAG 14217790 2.6053271 5.2517395 85-86
GAAGA 14880730 2.5176032 5.029566 85-86